PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_DED8A29EC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 73aa    MW: 7814.42 Da    PI: 10.7127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_DED8A29EC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY376.6e-124768122
                           ---SS-EEEEEEE--TT-SS-E CS
                   WRKY  1 ldDgynWrKYGqKevkgsefpr 22
                           ldDgy+WrKYGqK vk+s +pr
  Traes_3AL_DED8A29EC.1 47 LDDGYRWRKYGQKAVKNSSNPR 68
                           59*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-133368IPR003657WRKY domain
SuperFamilySSF1182904.84E-103969IPR003657WRKY domain
PROSITE profilePS5081112.9664268IPR003657WRKY domain
SMARTSM007740.00354772IPR003657WRKY domain
PfamPF031061.1E-74868IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
SGENDGEAGG SGSGNKEKAK GSAGRSGKKK ASKPRFAFQT RSENDILDDG YRWRKYGQKA  60
VKNSSNPRYG SSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-83HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567084.13e-29PREDICTED: probable WRKY transcription factor 12
RefseqXP_006646294.13e-29PREDICTED: probable WRKY transcription factor 56
SwissprotQ8GY115e-17WRK43_ARATH; Probable WRKY transcription factor 43
SwissprotQ93WY43e-16WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLW5CHE61e-44W5CHE6_WHEAT; Uncharacterized protein
STRINGMLOC_54950.17e-32(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3750633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.28e-17WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]